Papers

Characterization of gut microbiomes in rural Honduras reveals uncharacterized species and associations with human genetic variation

Citation:

Beghini F, Brito IL, Gerstein M, Christakis NA. Characterization of gut microbiomes in rural Honduras reveals uncharacterized species and associations with human genetic variation. Cell Rep. 2026 Jan 27;45(1):116724. doi: 10.1016/j.celrep.2025.116724. Epub 2025 Dec 18. PMID: 41420859.

Realism Drives Interpersonal Reciprocity but Yields to AI-Assisted Egocentrism in a Coordination Experiment

Citation:

Hirokazu Shirado, Kye Shimizu, Nicholas A Christakis, and Shunichi Kasahara. 2025. Realism Drives Interpersonal Reciprocity but Yields to AI-Assisted Egocentrism in a Coordination Experiment. In CHI Conference on Human Factors in Computing Systems (CHI ’25), April 26–May 01, 2025, Yokohama, Japan. ACM, New York, NY

Gut Microbiome Strain-sharing within Isolated Village Social Networks (Nature, 2024)

Citation:

Beghini F, Pullman J, Alexander M, Shridhar SV, Prinster D, Singh A, Matute Juárez R, Airoldi EM, Brito IL, Christakis NA. Gut microbiome strain-sharing within isolated village social networks. Nature. 2025 Jan;637(8044):167-175. doi: 10.1038/s41586-024-08222-1. Epub 2024 Nov 20. PMID: 39567691; PMCID: PMC11666459.

Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages

Citation:

Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL, Christakis NA. Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages. Cell Reports. 2024 Jul 3;43(7):114442. doi: 10.1016/j.celrep.2024.114442. Epub ahead of print. PMID: 38968070.